Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs17714284 chr7:127147205 G/A 6.81E-7 129 42.18 37.53 100.87 KM Plot
TGCT rs17733988 chr7:127657793 G/A 6.2E-5 133 46.07 37.32 9.77 KM Plot
TGCT rs17735366 chr7:127760886 A/G 1.24E-13 134 45.47 35.37 17.1 KM Plot
TGCT rs17737966 chr8:361499 A/G 0.000147 134 47.77 40.57 42.1 KM Plot
TGCT rs17748862 chr10:27572440 C/T 2.18E-9 134 24.35 46.07 42.18 KM Plot
TGCT rs17784025 chr2:29532167 A/G 6.16E-8 131 45.1 23.37 13.18 KM Plot
TGCT rs17784115 chr2:29533642 C/T 6.53E-8 132 45.1 24.23 13.18 KM Plot
TGCT rs1784786 chr11:111486043 A/G 4.79E-7 134 45.1 41.33 20.6 KM Plot
TGCT rs1799598 chr3:172409798 A/G 0.000108 130 45.1 37.7 25.57 KM Plot
TGCT rs183560 chr17:39363166 A/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs183561 chr17:39350697 T/A 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs1845230 chr18:1203097 T/C 8.67E-5 130 95.23 28.67 45.83 KM Plot
TGCT rs1860551 chr17:39388852 T/C 7.83E-7 132 13.17 56.7 42.27 KM Plot
TGCT rs187358436 chr6:156991347 T/C 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs1882542 chr12:107070049 A/C 0.000103 134 44.52 45.1 28.8 KM Plot